PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5237_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 362aa    MW: 39551.3 Da    PI: 6.1599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5237_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052522901154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++++ +  L++l+ +      +K + a++L++ +eYIk L
  RrC5237_p1 252 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 290
                 5788999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-10251306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-6251294No hitNo description
Gene3DG3DSA:4.10.280.102.5E-8255294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DNLLSSCFGQ RDADSDSGGS TVSIDSTLQM  60
MGLGFSSNSS SDWNETVLQE DLNSSFISSQ DHYQGQGFLS TTSSPYLLNP ACSSSSSPSS  120
SSSSLLQTLY DPEPSPYRFL STTSCSINDP QLSWASSKTS PHHQAAYGII NNFSNNTNSR  180
PFWSSSSTTN LNNTPHNSFI TTSQTIPTRL EERTKNQKTK GQSESLKRAK NDESPSKKQR  240
ISTPSPLPTF KVRKENLRDQ ITSLQQLVSP FGKTDTASVL QESIEYIKFL HDQVIVLSTP  300
YMKQGASVQQ QHQESGKNQN VNENQELRAH GLCLVPVSST FPVANETTVD FWTPTFGGSS  360
FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687231.10.0PREDICTED: transcription factor bHLH112-like isoform X1
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLM4EE690.0M4EE69_BRARP; Uncharacterized protein
STRINGBra027080.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein